Genomics & Proteomics

GENOME DATABASE :-

The Bioinformatics Centre has recently set up a manual FTP Server

on a PC platform of the complete genome sequences from several

organisms available in Entrez.

The URL address is :

http://pranag.physics.iisc.ernet.in target

Sequences can be downloaded from :

ftp://pranag.physics.iisc.ernet.in/Pub/genome

Login: anonymous and password is your full e-mail id.

A README fileis included which explains the complete contents of

the server and file location.

SEEBUGS :-

Software for the Examination, Exploration, and Broad Understanding

of Genome Sequences.

SEEBUGS can be downloaded from

ftp://ftp.congenomics.com/pub/seebugs

DRESH :-

Map positions of human genes homologous to Drosophila

melanogaster genes.

Genomes OnLine Database (GOLD 1.0) : -

A monitor of complete and ongoing genome projects world-wide.

Genome Databases and Genome Centers :-

World Wide Links at EERIE-Nimes, France

Genome Workstation :-

Genome Related Links at Roslin Institute, UK

Genomic Maps :-

Links to Genome Specific Resources at Biotech-Indiana

GeneQuiz :-

Automated genome sequence analysis and annotation

HuGeMap : -

Human Genome Map

IXDB :-

Human X chromosome genes map

REPuter :-

Fast computation of maximal repeats in complete genomes

A method for comparing circular genomes from gene locations :

application to mitochondrial genomes.

The programs implementing these calculations require well-arranged

gene organization data, they have not been released yet.However, one

of the authors will analyze circular genomes upon request. Data on the

gene organizations may be submitted electronically to

horimoto@ged.saga-med.ac.jp

GeneCards :-

A novel functional genomics compendium with automated data mining

and query reformulation support

ASSIRC (Accelerated Search for SImilarity Regions in Chromosomes) :-

A strategy for finding regions of similarity in complete genome sequences

Mapplet :-

A CORBA-based genome map viewer.

PPCMatrix :-

A PowerPC dotmatrix program to compare large genomic

sequences against protein sequences.