In-house database servers and derived databases
                                                                                                                                                                               
                                                  
Dr. K. Sekar
Bioinformatics Centre
(Centre of Excellence in Structural Biology and Bio-computing)
Supercomputer Education and Research Centre
Indian Institute of Science
Bangalore - 560 012
                                                  

 

Public databases hosted in the centre
Contact Person : Dr. K. Sekar
   
1.  PDB anonymous FTP server
     Dr. K. Sekar
     http://iris.physics.iisc.ernet.in/
     http://10.188.1.11/
2.  Genome Sequence FTP server
     Dr. K. Sekar
     http://pranag.physics.iisc.ernet.in/
     http://10.188.1.12/
3.  SCOP Mirror site (Structural Classification of Proteins)
     Dr. K.Sekar
     http://iris.physics.iisc.ernet.in/scop/
     http://10.188.1.11/scop/
In-house derived databases
Contact Person : Dr. K. Sekar
   
1.  CADB: Conformational Angles DataBase of Proteins
     S.S. Sheik, P. Ananthalakshmi, G. Ramya Bhargavi & K. Sekar
     NUCL. ACIDS. RES.(2003), 31(1), 448-451.
                                         
     CADB - 2.0: Conformation Angles DataBase
     K.Samaya Mohan, S.S.Sheik, J.Ramesh, B.Balamurugan, M.Jeyasimhan,
     C.Mayilarasi & K. Sekar
     ACTA CRYST (2005). D61, 637-639.
                                          and
     CADB - 3.0: Conformation Angles DataBase
     K.Gopalakrishnan, S.S.Sheik, C.Vasuki Ranjani, A.Udayakumar & K. Sekar
     PROTEIN AND PEPTIDE LETTERS (2007). 14, 665-668.
     http://cluster.physics.iisc.ernet.in/cadb/
2.  SSEP: Secondary Structural Elements of Proteins
     V. Shanthi, P. Selvarani, Ch. Kiran Kumar, C.S.Mohire & K. Sekar
     NUCL. ACIDS. RES.(2003), 31, 3404-3405.
                                            and
     SSEP - 2.0: Secondary Structural Elements of Proteins
      B. Balamurugan, K. Samaya Mohan, J. Ramesh, M.N.A. Md Roshan,
      K. Sumathi & K. Sekar
     ACTA CRYST (2005). D61, 631-636.
     http://cluster.physics.iisc.ernet.in/ssep/
3.  THGS: A web based database of Transmembrane Helices in Genome    Sequences
     S.A. Fernando, P. Selvarani, Soma Das, Ch. Kiran Kumar, Sukanta Mondal,
     S. RamaKumar & K. Sekar
     NUCL. ACIDS. RES.(2004), 32, D125-D128.
     http://pranag.physics.iisc.ernet.in/thgs/
4.  LySDB: Lysozyme Structural Database
     K. Samaya Mohan, Soma Das, C. Chockalingam, V. Shanthi & K. Sekar
     ACTA CRYST.(2004), D60, 597-600.
     http://iris.physics.iisc.ernet.in/lysdb/
5.  SMS: Sequence, Motif and Structure
     B.Balamurugan, M.N.A.Md.Roshan, Daliah Michael, M.Ambaree, S.Divya, H.Keerthana,
     M.Seemanthini & K. Sekar
     IN SILICO BIOLOGY.(2006), 6, 229-235.
     http://pranag.physics.iisc.ernet.in/sms/
    Miscellaneous

      ICA : Indian Crystallographic Association
     Developed by : Dr.K.Sekar and team members
     http://iris.physics.iisc.ernet.in/ica/

Bioinformatics Centre, Supercomputer Education and Research Centre,
Indian Institute of Science, Bangalore - 12, India.