Sequence Database

GenBank Database :-

Release 107.0 (6/98) as part of GCG package

See also:

http://www.ncbi.nlm.nih.gov/Entrez/index.html

GenBank-Fetch at Washington U.

EMBL Abridged :-

Nucleotide Sequence Database

Release 55.0 (6/98) as part of GCG package

See also:

http://www.ebi.ac.uk/embl/index.html

PIR - Protein :-

Protein Identification Resource Database

Release 56.0 (3/98) as part of GCG package

See also:

http://www-nbrf.georgetown.edu/pir/

Swissprot :-

Protein Sequence Database

Release 36.0 (11/98) as part of GCG package

See also:

http://www.expasy.ch/sprot/sprot-top.html at ExPASy, Switzerland

SP - TrEMBL :-

is a supplement of SWISS-PROT that contains all the translations

of EMBL nucleotide sequence entries not yet integrated

in SWISS-PROT.

Release 6.0 (6/98) - as part of GCG package

See also:

http://www.expasy.ch/sprot/

SP-TrEMBL at EMBL

PROSITE :-

Protein Sites and Patterns Database

Release 14.0 (11/97) - as part of GCG package

See also:

http://www.expasy.ch/prosite at ExPASy, Switzerland,

PrositeScan at ISREC, Switzerland and

PROSITE-Search at EBI

REBASE :-

(6/98) - as part of GCG package

Restriction Enzyme Database

See also:

http://rebase.neb.com/rebase/rebase.html

and ReBase-Search at New England Biolabs,

ReBase at EMBL-Heidelberg

BLOCKS :-

Database of Highly Conserved Regions in Proteins and

BLOCKSat EMBL-Heidelberg

BLITZ :-

Fast Search at EBI

dbEST :-

Database of Expressed Sequence Tags

at the National Center for Biotechnology Information, NCBI USA

DDBJ:-

DNA Sequences and derived protein sequences

ENTREZ :-

Integrated search system for sequence, structure and Medline databases

at the National Center for Biotechnology Information, USA

GDB :-

Human Genome Data Base at Johns Hopkins

GSDB:-

Genome Sequence Database is a database of publicly available

nucleotide sequences and their associated annotation.

The Human Transcript Database :-

A catalogue of full length cDNA inserts

HIV :-

HIV Sequence database at Los Alamos.

IMAGENE :-

An integrated computer environment for sequence annotation and analysis

OWL :-

Non-Redundant Protein Sequence Database at

University of Leeds and

OWL at UCL-London, UK

PEDB :-

Prostate Expression Database. Curated EST and cDNA sequences

from human prostrate cDNA libraries.

RDP :-

The ribosomal Database Project

Ribosomal RNA sequences, alignments & annotations.

Small RNA Database :-

at Baylor College of Medicine

Swissknife :-

'lazy parsing' of SWISS-PROT entries

The swissknife modules are available at ftp://ftp.ebi.ac.uk/software/swissprot

TIGR Databases:-

Collection of curated databases containing DNA and protein sequence,

gene expression, cellular role, protein family, and taxonomic data for

microbes, plants and humans at The Institute of Genomic Research

TargetDB :-

A database of peptides targeting proteins to cellular locations.