Sequence Database

Previous Page Up one level Next Page
GenBank Database :- 
Release 107.0 (6/98) as part of GCG package
See also:
http://www.ncbi.nlm.nih.gov/Entrez/index.html
GenBank-Fetch at Washington U.

 
EMBL Abridged :-
Nucleotide Sequence Database 
Release 55.0 (6/98) as part of GCG package
See also: 
http://www.ebi.ac.uk/embl/index.html

 
PIR - Protein :-
Protein Identification Resource Database 
Release 56.0 (3/98) as part of GCG package
See also:
http://www-nbrf.georgetown.edu/pir/

 
Swissprot :-
Protein Sequence Database
Release 36.0 (11/98) as part of GCG package
See also:
http://www.expasy.ch/sprot/sprot-top.html  at ExPASy, Switzerland

 
SP - TrEMBL :-
is a supplement of SWISS-PROT that contains all the translations 
of EMBL nucleotide sequence entries not yet integrated 
in SWISS-PROT. 
Release 6.0 (6/98) - as part of GCG package
See also:
http://www.expasy.ch/sprot/
SP-TrEMBL at EMBL

 
PROSITE :-
Protein Sites and Patterns Database
Release 14.0 (11/97) - as part of GCG package
See also:
http://www.expasy.ch/prosite at ExPASy, Switzerland,
PrositeScan at ISREC, Switzerland and
PROSITE-Search at EBI

 
REBASE :-
(6/98)  - as part of GCG package
Restriction Enzyme Database 
See also:
http://rebase.neb.com/rebase/rebase.html 
and ReBase-Search at New England Biolabs,
ReBase at EMBL-Heidelberg 

 
*2*BLOCKS :-
Database of Highly Conserved Regions in Proteins  and
BLOCKSat EMBL-Heidelberg

 
BLITZ  :-
Fast Search at EBI

 
*2*dbEST :-
Database of Expressed Sequence Tags
at the National Center for Biotechnology Information, NCBI USA

 
DDBJ:-
DNA Sequences and derived protein sequences

 
-ENTREZ :-
Integrated search system for sequence, structure and Medline databases
at the National Center for Biotechnology Information, USA

 
*1*GDB :-
Human Genome Data Base at Johns Hopkins

 
GSDB:-
Genome Sequence Database is a database of publicly available
nucleotide sequences and their associated annotation.

 
The Human Transcript Database :-
A catalogue of full length cDNA inserts

 
HIV :-
HIV Sequence database at Los Alamos.

 
-IMAGENE :-
An integrated computer environment for sequence annotation and analysis

 
*1*OWL :-
Non-Redundant Protein Sequence Database at
University of Leeds and
OWL at UCL-London, UK

 
PEDB :-
Prostate Expression Database.  Curated EST and cDNA sequences
from human prostrate cDNA libraries.

 
RDP :-
The ribosomal Database Project
Ribosomal RNA sequences, alignments & annotations.

 
Small RNA Database :-
at Baylor College of Medicine

 
Swissknife :-
'lazy parsing' of SWISS-PROT entries
The swissknife modules are available at ftp://ftp.ebi.ac.uk/software/swissprot

 
TIGR Databases:-
Collection of curated databases containing DNA and protein sequence,
gene expression, cellular role, protein family, and taxonomic data for
microbes, plants and humans at The Institute of Genomic Research

 
TargetDB  :-
A database of peptides targeting proteins to cellular locations.