List of Publications
Submitted
69. Structural rigidity of Seeman DNA nanostrcutures, Kakali Sen, M. Santosh and Prabal K Maiti (submitted to JACS)
68.
PAMAM dendrimer : a pH controlled nanosponge,
Prabal K. Maiti,
(submitted)
67.
Sequence dependence of conformation of single strand DNA homo-oligonucleotides
in aqueous solution: Unique structural features of poly-Guanine,
66.
Effect of Mg(+2) ions on the relative stability of JX
DNA crossover motifs, Prabal K. Maiti,
Tod. A. Pascal, Nagarajan Vaidehi, and William A. Goddard III (submitted to
Nanotechnology)
65.
Thermodynamics of DNA folding: Theoretical analysis of the helical stacking
preferences in a DNA Three-way junction, Tod A.
Pascal, Prabal. K. Maiti, Nagarajan Vaidehi, and William A.
Goddard III (submitted to JACS)
Published
64.
Absolute Entropy and Energy of Carbon-Dioxide using the Two-Phase Thermodynamic
Model, Shao-Nung Huang, Tod
Pascal, William A. Goddard, Prabal K Maiti, and Shiang-Tai Lin,
JCTC, xxx (2011)
63. Biopolymers in nanopores: Challenges and Promises, Hemant Kumar, Yves Lansac, Matthew A Glaser and Prabal K Maiti, Soft Matter, xxx (2011)
62. Thermodynamics of water entry in the hydrophobic channels of carbon nanotube, Hemant Kumer, Biswaroop Mukerjee, S. T. Lin, Chandan Dasgupta, A. K. Sood and Prabal K Maiti , JCP, 134, 124105 (2011)
61. Interaction of Single-Walled Carbon nanotubes with Poly(Propyl Ether Imine) dendrimers, G. Jayamurugan, K. S. Vasu, Y. B. R. D. Rajesh, S. Kumar, Prabal K. Maiti, A. K. Sood, and N. Jayaraman, JCP, 134, 104507 (2011)
60. Verifying Scalings for Bending rigidity of bilayer membranes using Mesosacle models, F. Thakkar, Prabal K. Maiti, V. Kumaran and K. G. Ayappa, Soft Matter, 7, 3963 (2011)
59. DNA compaction by dendrimer, B. Nandy and Prabal K Maiti, JPCB, 115, 217-230 (2011)
58. Complexation of siRNA with dendrimer: a molecular modelling approach, V. Vasumathi and Prabal K. Maiti, Macromolecules, 43, 8264-8274 (2010)
57. Entropy and Dynamics of Water in Hydration Layers of a Bilayer, A. Debnath, B. Mukherjee, K. G. Ayappa, Prabal K. Maiti and S. T. Lin JCP, 133, 174704 (2010)
56. Two-Phase Thermodynamic Model for Efficient and Accurate Absolute Entropy of Water from Molecular Dynamics Simulations, Shiang-Tai Lin, Prabal K. Maiti and William A. Goddard, J. Phys. Chem. B, 114, 8191–8198 (2010) (pdf version of the article)
55.
Single file diffusion of Water inside Narrow Carbon Nanorings , Biswaroop Mukherjee, Prabal K. Maiti Chandan Dasgupta and A. K. Sood ACS Nano,2010, 4 (2), pp 985-991 (pdf
version of the article)
54.
Computer simulation of Liquid Crystals, Prabal
K Maiti, V Arun Kumar, and, K G. Ayappa Journal
of Indian Institute of Science, 89, 229-241 (2009) (pdf version of the article)
53. Anomalous diffusion of charged and flexible nanoscopic molecules in solution: non-Stokesian size dependence for PAMAM dendrimer and pH dependence, Prabal K. Maiti and Biman Bagchi JCP 131, 214901 (2009)
52.
Aggregation Properties of Multi-headed Surfactants in Water as Revealed
from Coarse- grained Molecular Dynamics Simulation", Suman
K Samanta, Santanu
Bhattacharya, and, Prabal K. Maiti JPCB, 113,
13545-13550 (2009))
51.
Jump reorientation of water molecules confined in narrow carbon
nanotubes, Biswaroop Mukherjee,
Prabal K. Maiti Chandan Dasgupta and A. K. Sood JPCB, 113, 10322-10330 (2009) (pdf
version of the article)
50. The Influence of Bilayer Composition on the Gel to Liquid Crystalline Transition, Ananya Debnath, K. G. Ayappa, V. Kumaran and Prabal K Maiti, JPCB, (2009) (pdf version of the article)
49.
Water reorientation by large amplitude angular jumps confined in nanoring, Biswaroop Mukherjee, Prabal K. Maiti Chandan Dasgupta and A. K. Sood, JNN, 9, 5303-5306 (2009)
48.
Elastic properties of Boron Nitride Nanotube and comparison with Carbon
nanotube, M. Santosh, Prabal
K. Maiti and A. K. Sood,
JNN, 9, 5425-5430 (2009)
47.
The poly dA helix: A new structural motif for
high performance DNA-based molecular switches, Saikat
Chakraborty, Suruchi
Sharma, Prabal K Maiti,
and Yamuna Krishnan, Nucleic Acids Research, 37, 2810-2817 (2009) (pdf version of the article)
46.
Structure of PAMAM dendrimers up to limiting generations: A meso
scale description, Prabal K. Maiti,
Tahir Cagin, Shiang-Tai Lin and William A. Goddard III, Journal of
Chemical Physics, 130, 144902-144902-10 (2009). (pdf version of the article)
45.
Force induced melting of DNA, M. Santosh and Prabal K Maiti, JPCM, 21, 034113 (2009) (pdf version of the article).
44. Binding
of DNA Nucleobases and Nucleosides with Graphen, Neenu Varghese, Umesha Mogera, A Govindaraj, Anindya Das, Prabal K. Maiti,
A. K. Sood, C. N. R. Rao, Chem Phys Chem, 10,
206-10
(2009)
43.
Strongly anisotropic orientational relaxation of water molecules in narrow
carbon nanotubes and nanorings , Biswaroop Mukherjee, Prabal K. Maiti Chandan Dasgupta
and A. K. Sood , ACS Nano, 2, 1189-1196 (2008) (pdf version of the article).
42.
Counterion distribution and zeta potential in PAMAM dendrimer, Prabal K Maiti and Rene Messina, Macromolecules, 41, 5002-5008 (2008)
41.
Binding of Nucleobases with Single-Walled Carbon
Nanotubes , Anindya Das, A. K. Sood,
Prabal K. Maiti Mili Das, R. Varadaranjan, and C.
N. R. Rao, CPL, 453 266-273 (2008) (pdf
version of the article).
40.
Strong correlations and Fickian water water diffusion in narrow carbon nanotube, Biswaroop Mukherjee, Prabal K. Maiti Chandan Dasgupta and A. K. Sood, JCP, 126 124704 (2007) (pdf version of the article).
39.
Irreversible pressure-induced transformation of Boron Nitride nanotubes, Surajit Saha, Vikram
Gadagkar, Prabal K. Maiti, D. V. S. Muthu, D. Golberg, C. Tang, C. Zhi, Y.
Bando and A. K. Sood, Journal of Nanoscience
and Nanotechnology, 7, 1810 (2007)
38.
Double-Walled Carbon Nanotube Bundles Under Hydrostatic Pressure: Raman Experiments
and Simulations, Vikram Gadagkar,
Surajit Saha, D. V. S. Muthu, Prabal K. Maiti, Yves Lansac, A. Jagota, A. Moravsky, R. O. Loutfy and A. K. Sood, Journal of Nanoscience and Nanotechnology, 7, 1753 (2007)
37.
Structure and Dynamics of confined water inside Carbon nanotube, Biswaroop Mukherjee, Prabal K. Maiti Chandan Dasgupta and A. K. Sood, Journal of Nanoscience and
Nanotechnology, 7, 1796 (2007)
36. Understanding DNA based Nanostructures, Prabal K.
Maiti, Tod.
A. Pascal, Nagarajan Vaidehi,
and William A. Goddard III, Journal of Nanoscience and Nanotechnology, 7, 1712 (2007)
35.
Exploring DNA Groove water dynamics through hydrogen bond life time and orientatioanl relaxation, S. Pal, Prabal
K. Maiti and Biman Bagchi, JCP, 125, 234903 (2006)
34.
Multiple time scales in Solvation Dynamics of DNA in Aqueous Solution: Role of
Water, Counterions, and Cross-Correlationsn, S. Pal, Prabal K. Maiti, James T. Hynes
and Biman Bagchi, JPCB, 110, 26396 (2006)
33.
Solvent quality changes the structure of G8 PAMAM dendrimer, a disagreement
with some experimental interpretations, Prabal K. Maiti and W. A. Goddard III, JPCB, 110, 25628 (2006)
32.
Structure and Dynamics of DNA-dendrimer complexation: Role of counterions, water
and base pair sequence, Prabal K. Maiti and Biman Bagchi, Nano Letters , 6, 2478 (2006) (pdf version of the article).
31.
Entropy of Water in the Hydration Layer of Major and Minor Grooves of DNA, Biman Jana, Subrata Pal, Prabal K. Maiti, Shiang-Tai Lin, James T. Hynes, Biman
Bagchi, JPCB, 110, 19611 (2006) (pdf version of the article).
30. Structure
of poly(propyl ether imine
) (PETIM) dendrimer from fully atomistic molecular Dynamics Simulation and by
Small Angle X-ray scattering, Chandan Jana, G. Jayamurugan, R. Ganapathy, Prabal K. Maiti, N. Jayaraman and A. K. Sood, JCP, 124, 204719 (2006) (pdf version of the article).
29.Collapse
of Double-Walled Carbon Nanotube Bundles Under Hydrostatic Pressure, Vikram Gadagkar, Prabal K. Maiti, Yves Lansac, A. Jagota, and A. K.
Sood, PRB, 73,085402 (2006) (pdf
version of the article).
28.
Atomic Level simulations of Seeman DNA nanostructures: the paranemic crossover
in salt solution, Prabal K. Maiti,
Tod. A. Pascal, Nagarajan Vaidehi, Jiyoung Heo and William A. Goddard III, Biophysical Journal, 90, 1463-1479, 2006 (pdf
version of the article).
27.
Anisotropic and sub-diffusive water motion at the surface of a DNA and of an
anionic micelle CsPFO, S. Pal, Prabal
K. Maiti and Biman Bagchi , Journal of Physics,
Cond. Matter,
S4317-S4331 (2005)
26.
Dynamics and Thermodynamics of water in PAMAM dendrimers at subnanosecond
time scale, Shiang-Tai Lin, Prabal
K. Maiti, and William A. Goddard III , Journal of Physical
Chemistry, 109,
8663-8672, 2005 (pdf version of the article).
25. The MPSim-Dock Hierarchical Docking algorithm:
Application to the eight Trypsin Inhibitor
co-crystals by Art Cho, John Wendel, Nagarajan Vaidehi, Peter Kekenes-Huskey, Wely Floriano, Prabal K. Maiti, William Goddard III, Journal of Computational Chemistry, 26, 48-71, 2005
(pdf version of the article)
24.
The Effect of solvent and pH on the structure of PAMAM dendrimers, Prabal K. Maiti, Tahir Cagin, Shiang-Tai
Lin and William A. Goddard III, Macromolecules, 38, 979-991, 2005 (pdf version of the article)
23.
The stability of Seeman JX DNA topoisomers of paranemic crossover (PX)
molecules as a function of crossover number, Prabal
K. Maiti, Tod. A. Pascal, Nagarajan Vaidehi, and William A.
Goddard III, Nucleic Acids Reserach, 32, 6047-6056, 2004 (pdf version of the article)
22.
Molecular dynamics study of surfactant-mediated decane/water
interface: Effect of molecular architecture of alkyl benzene sulfonate, Seung Soon Jang, Shiang-Tai Lin, Prabal K. Maiti, Mario Blanco, William A. Goddard III , Patrick Shuler and Yongchun Tang, Journal of Physical Chemistry B, 108, 12130-12140, 2004 (pdf version of the article)
21.
Structure of PAMAM dendrimers: Generation 1 through 11, Prabal
K. Maiti, Tahir Cagin, Guofeng Wang and William
A. Goddard III, Macromolecules,
37, 6236-6254, 2004 (pdf version of the article)
20.
Coarse-grained simulation of polymer translocation through an artificial
nanopore, Yves Lansac, Prabal
K. Maiti, and Matthew A. Glaser, Polymer, 45, 3099, 2004. (pdf version of the article)
19.
Entropy driven Smectic C phase in system of Zig-zag
shaped molecules, Prabal K. Maiti,
Yves Lansac, Matthew A. Glaser and Noel A. Clark, Phy. Rev. Lett.
92, 025501, 2004. (pdf version of the article)
18.
Phase behavior of Bent-core molecules, Yves Lansac, Prabal K. Maiti, Matthew A.
Glaser and Noel A. Clark, Phys. Rev. E, 67,011703,2003 (pdf version of the article)
17.
Self-Assembly in Surfactant Oligomers: A
Coarse-Grained Description through Molecular Dynamics Simulations, Prabal K Maiti, Yves Lansac, Matthew A. Glaser , Noel A. Clark and Yannick Rouault, Langmuir, 18, 1908, 2002 (pdf version of the article)
16.
Isodesmic self-Assembly in Lyotropic
Chromonic systems, Prabal K
Maiti, Yves Lansac, Matthew
A. Glaser and Noel A. Clark, Liquid Crystals, 29, 619, 2002. (pdf version of the article)
15.
Induced Anticlinic Ordering and nanophase
segregation of Bent-core molecules in a Smectic Solvent: Prabal
K Maiti, Yves Lansac,
Matthew A. Glaser and Noel A. Clark, Phy. Rev. Lett.,
88, 065504, 2002
(pdf version of the article)
14.
Cross-Linking of micelles by Gemini Surfactants, Prabal
K Maiti, Kurt Kremer, Oliver Flimm,
Debashish Chowdhury and
Dietrich Stauffer, Langmuir, 16,
3784 (2000) (pdf version of the article)
13.
Self-Assembling Amphiphilic System: A
12.
A Microscopic Model of Gemini Surfactants: Self-assemblies in Water and at
Air-Water Interface : Prabal
K Maiti, Debashish Chowdhury, J. Chem. Phy. 109, 5126
(1998) (pdf
version of the article) .
11.
Micellar aggregates of Gemini surfactants: Monte Carlo Simulation of a
Microscopic Model: Prabal K Maiti,
Debashish Chowdhury, Europhys. Lett. 41, 183 (1998) (pdf version of the article) .
10.
Numerical Approach to Chain Molecules in Porous Media: A Coarse Grained
Description: Prabal K. Maiti
and Debashish Chowdhury, Int. J. Mod. Phy. C 8,
1335 (1997) (pdf version of the article) .
9.
Kinetics of Phase Ordering in Microemulsions and
Micellar Solutions: Debashish Chowdhury
and Prabal K. Maiti, in
Phase Transitions in Complex Fluids, Eds. P. Toledano
and A. M. Figueiredo Neto,
(World Scientific, 1997), p 371-381 (pdf
version of the article) .
8.
Solid-on-solid model of interface with bending rigidity II: restricted and
unrestricted step sizes : Prabal
K Maiti, Debashish Chowdhury, Int. J. Mod. Phy. B 12, 1531 (1998).
7.
Out-of-plane phase segregation and in plane clustering in a binary mixture of amphiphiles at air-water interface : Debashish
Chowdhury, Prabal K. Maiti, S. Shabapandit and P. Taneja, Phys. Rev. E. 56, 667 (1997) (ps
version of the article) .
6.
Oil-Water interface in the 2-dimensional Larson type of model
: Prabal K. Maiti,Phys. Lett.
A , 230, 369 (1997)
5.
Spin glass theory in neural network : Prabal K. Maiti in Modeling of
complex systems, Eds. J. K. Bhattacharjee and A. K. Mallik, (Narosa, New Delhi, 1997)
p 329-404.
4.
Discrete solid-on-solid model of interface with bending rigidity: Roughening
versus crumpling : Prabal K. Maiti,
Debashish Chowdhury and Jayanta K. Bhattacherjee, Phys. Rev. E , 54, 2670 (1996). (pdf version of the article) .
3.
Oil-Water Interface in the Widom model: Is it smooth,
rough or crumpled? : Prabal K. Maiti,
Debashish Chowdhury, J. Phys. I France , 5, 671 (1995).
2.
Improved performance of the Hopfield and Little neural network models with time
delayed dynamics : Prabal K.
Maiti, Prabir K. Dasgupta and Bikas K. Chakrabarti , Int. J. Mod. Phys. B , 9, 3025 (1995).
1.
Spin rotationally symmetric path integral formulation of $N$-orbital Hubbard model : Prabal K Maiti, Avinas Singh, Phys. Rev. B , 49, 6078 (1994). (pdf version of the article) .